PmiREN: Plant microRNA Encyclopedia

Gma-MIR171l

Basic info.

miRNA locus ID
Gma-MIR171l

miRNA locus accession
PmiREN006855

Organism
Glycine max

Genomic location
Gma-Gm13 26271122 26271247 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GATATGGGAAGCA  G    C          A         C  A  -  -GA     A   AG
               GA AAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTAC TGT  
               || |||| |||||||||| ||||||||| || || ||   ||||| |||   
               CT TTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATG ACG  
CCCCCCGAGTAGTTA  A    A          G         A  -  A  ATA     -   AA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G136300.1	1.0	NA	0 (2)
Glyma.11G065200.1	1.5	1	0 (2)
Glyma.13G081700.1	3.0	2	0 (3)
Glyma.18G089400.1	NA	NA	0 (3)
Glyma.10G261600.1	1.5	NA	2 (1)
Glyma.11G110100.1	5.0	2	2 (2)
Glyma.05G046700.1	NA	NA	2 (1)
Glyma.11G215500.1	NA	NA	2 (2)
Glyma.18G041100.1	NA	NA	2 (2)
Glyma.19G061100.1	NA	NA	2 (1)
Glyma.20G113200.1	NA	NA	2 (1)
Glyma.20G129200.1	1.5	NA	4 (1)
Glyma.01G079500.1	1.0	NA	NA
Glyma.03G031800.1	1.0	NA	NA
Glyma.11G168219.1	1.0	NA	NA
Glyma.01G177200.1	1.5	NA	NA
Glyma.04G251900.1	2.0	NA	NA
Glyma.06G110800.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018