PmiREN: Plant microRNA Encyclopedia

Gma-MIR171n

Basic info.

miRNA locus ID
Gma-MIR171n

miRNA locus accession
PmiREN006857

Organism
Glycine max

Genomic location
Gma-Gm12 35489079 35489202 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AATTAGCACAT  -    T               C       TGAA    T    ATTATGA
            GA CAAA TAAGGTATTGGCGTG CTCAATT    TACA GGCT       
            || |||| ||||||||||||||| |||||||    |||| ||||        
            CT GTTT ATTCTATAACTGCGC GAGTTAG    ATGT CCGA       
CTACCTTTTCTT  C    T               C       TTTG    T    CCTAAAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G177200.1	3.0	NA	0 (2)
Glyma.16G168300.3	4.5	NA	2 (1)
Glyma.01G241300.1	NA	NA	2 (1)
Glyma.10G064000.1	NA	NA	2 (1)
Glyma.12G241600.1	NA	NA	2 (1)
Glyma.17G019800.2	NA	NA	2 (1)
Glyma.19G009000.1	NA	NA	2 (3)
Glyma.19G009100.1	NA	NA	2 (3)
Glyma.01G079500.1	1.0	NA	NA
Glyma.01G136300.1	1.0	NA	NA
Glyma.03G031800.1	1.0	NA	NA
Glyma.11G168219.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018