PmiREN: Plant microRNA Encyclopedia

Gma-MIR171t

Basic info.

miRNA locus ID
Gma-MIR171t

miRNA locus accession
PmiREN006863

Organism
Glycine max

Genomic location
Gma-Gm06 48964764 48964885 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCTGTAT    CA   ATCA             C       T   G -       AACAT
         GAAG  CAA    AGGTATTGGCGCG CTCAATT GAA T CATGGTT     
         ||||  |||    ||||||||||||| ||||||| ||| | |||||||     G
         CTTC  GTT    TCTATAACTGCGC GAGTTAA TTT A GTACCGA     
TCTACCTTT    AC   CTAC             C       T   G T       ACAAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Glyma.01G079500.1	1.0	NA	0 (4)
Glyma.16G073300.1	NA	NA	1 (3)
Glyma.04G253500.1	NA	NA	2 (1)
Glyma.06G213000.1	NA	NA	2 (1)
Glyma.06G289400.1	NA	NA	2 (1)
Glyma.07G182200.1	NA	NA	2 (1)
Glyma.07G224200.1	NA	NA	2 (1)
Glyma.08G158500.1	NA	NA	2 (1)
Glyma.09G256402.1	NA	NA	2 (1)
Glyma.10G006200.1	NA	NA	2 (2)
Glyma.15G266100.1	NA	NA	2 (1)
Glyma.19G111800.1	NA	NA	2 (2)
Glyma.19G111900.3	NA	NA	2 (2)
Glyma.01G136300.1	1.0	NA	NA
Glyma.03G031800.1	1.0	NA	NA
Glyma.11G168219.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

>An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biol, 2018