Gar-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TCA          A  -GT         C       C      AT     AAG  -GCA     TGAT    CA
     TGGAATAGTA CT   GATATTGGC TGGTTCA TCAGAC  GAAAC   GC    GTTTT    CTCT  
     |||||||||| ||   ||||||||| ||||||| ||||||  |||||   ||    |||||    ||||   
     ACTTTGTCAT GA   CTATAACCG GCCGAGT AGTCTG  TTTTG   TG    CGAAG    GAGA  
TCTAA          -  ATT         T       T      -G     --G  ACTA     --TT    AG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_017768217.1 0.5 NA NA
XM_017781711.1 0.5 NA NA
XM_017781712.1 0.5 NA NA
XM_017782901.1 0.5 NA NA
XM_017782902.1 0.5 NA NA
XM_017787403.1 0.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference