Gar-MIR171k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AGAAGC   --    ------AA     C          A         C  A  -  -GA       A   A
      AAA  AGAA        GAAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTACGA TTG 
      |||  ||||        ||||| |||||||||| ||||||||| || || ||   ||||||| ||| T
      TTT  TCTT        CTTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGCT GAC 
         TA    CCCTACAC     A          G         A  -  A  ATA       -   T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_017782901.1 0.0 NA NA
XM_017782902.1 0.0 NA NA
XM_017768217.1 1.0 NA NA
XM_017781711.1 1.0 NA NA
XM_017781712.1 1.0 NA NA
XM_017787403.1 1.0 NA NA
XM_017750598.1 2.0 NA NA
XM_017789517.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference