Hbr-MIR171h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AT      T   G    T         C       C      GTGGAA   -      TTTTCTT   TT
     GTGAAA AGC ATTG GATATTGGC TGGTTCA TCAGAC      AAC CTACCT       GGC  
     |||||| ||| |||| ||||||||| ||||||| ||||||      ||| ||||||       |||   
     TACTTT TCG TGAC CTATAACCG GCCGAGT AGTTTG      TTG GGTGGG       TCG  
TCTCT      C   -    T         T       T      GTTTTG   T      ------T   TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_021792397.1 0.5 NA NA
XM_021811037.1 0.5 NA NA
XM_021811038.1 0.5 NA NA
XM_021811039.1 0.5 NA NA
XM_021822213.1 0.5 NA NA
XM_021830103.1 0.5 NA NA
XM_021833856.1 2.0 2 NA
XM_021833857.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference