Hbr-MIR171k

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGGAAGCA AT   ------TA      C          A         C  A  -  -GA      TATTC
        A  TAT        AGAAAG GATGTTGGTG GGTTCAATC GA GA CG   TTTACA     
        |  |||        |||||| |||||||||| ||||||||| || || ||   ||||||      
        T  ATG        TCTTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGT     
         AT   TTTTTACC      A          G         A  -  A  AGA      TAAGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_021792397.1 1.0 NA NA
XM_021811037.1 1.0 NA NA
XM_021811038.1 1.0 NA NA
XM_021811039.1 1.0 NA NA
XM_021822213.1 1.0 NA NA
XM_021830103.1 1.0 NA NA
XM_021804347.1 2.0 1 NA
XM_021814299.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference