PmiREN: Plant microRNA Encyclopedia

Hbr-MIR171l

Basic info.

miRNA locus ID
Hbr-MIR171l

miRNA locus accession
PmiREN009165

Organism
Hevea brasiliensis

Genomic location
Hbr-NW_018746672.1 119683 119799 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TAATGGAGGAAATCTGATGA       A                  CC       GT
                      TGTTGGC TGGTTCAATCAAATTAAA  ACTCAGT  
                      ||||||| ||||||||||||||||||  |||||||  G
                      ATAACCG GCCGAGTTAGTTTAATTT  TGAGTCG  
TAAATAATCGCAGACTTATACT       C                  CT       GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_021792397.1	NA	NA
XM_021811037.1	NA	NA
XM_021811038.1	NA	NA
XM_021811039.1	NA	NA
XM_021822213.1	NA	NA
XM_021830103.1	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Hbr-MIR171l

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