Hsy-MIR171j

Basic info.

• miRNA locus ID
• Hsy-MIR171j

• miRNA locus accession
• PmiREN009422

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01007033.1  16429  16557  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  GC    CAA    AA     C          A         C  A  -  -GA      C  G A
    GAAG   AATA  GAAAG GATATTGGTG GGTTCAATC GA GA CG   TTTACG AT G 
    ||||   ||||  ||||| |||||||||| ||||||||| || || ||   |||||| || | C
    CTTT   TTAT  CTTTC CTATAACCGC CCGAGTTAG CT CT GC   AAATGC TG C 
TTTT    TCC    AC     A          G         A  -  A  ATA      -  G T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference