Hsy-MIR171k

Basic info.

• miRNA locus ID
• Hsy-MIR171k

• miRNA locus accession
• PmiREN009423

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01007779.1  44708  44824  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

     A  TCT    ACT   -        A               C    CT      GC
 TATG TA   GTAA   GGG GATGTTGG ATGGCTCAATCAAGT AAAT  CCTGAA  
 |||| ||   ||||   ||| |||||||| ||||||||||||||| ||||  ||||||  T
 ATAC AT   CATT   TCC CTATAACC TGCCGAGTTAGTTTA TTTA  GGGTTT  
C    -  TCT    ---   A        G               A    CT      TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference