Hsy-MIR171aj

Basic info.

• miRNA locus ID
• Hsy-MIR171aj

• miRNA locus accession
• PmiREN009448

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01010718.1  33595  33733  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   TGGT     T  T     C         T       C     -  -AAACC   TTAAAAA     TTTA
       TGAAA AG CACTG GATGTTGGC CGGTTCA TCAAA CA      GCT       GAGTT    
       ||||| || ||||| ||||||||| ||||||| ||||| ||      |||       |||||    C
       ACTTT TC GTGAT CTATAACCG GCCGAGT AGTTT GT      CGA       CTTAA    
CTTCTCT     T  -     C         T       T     C  GTCGTT   --TGCGC     TGTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference