Hsy-MIR171al

Basic info.

• miRNA locus ID
• Hsy-MIR171al

• miRNA locus accession
• PmiREN009450

• Organism
• Hibiscus syriacus

• Genomic location
• Hsy-MBGJ01014659.1  13480  13620  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  AC      T    ACTGT         - T   T  C      AT     ATAAGGCATTTG     -     AAG
    ATGGAA AGTA     GATATTGGC C GCT CA TCAGAC  GAGAC            TTGAT CTTTC   
    |||||| ||||     ||||||||| | ||| || ||||||  |||||            ||||| |||||   A
    TACTTT TCAT     CTATAACCG G CGA GT AGTCTG  TTTTG            GACTA GAAAG   
GCTA      C    GTATT         T C   -  T      -G     ----------GT     C     CTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference