PmiREN: Plant microRNA Encyclopedia

Jcu-MIR171a

Basic info.

miRNA locus ID
Jcu-MIR171a

miRNA locus accession
PmiREN010037

Organism
Jatropha curcas

Genomic location
Jcu-NW_012124275.1 866743 866882 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GCT      T T     T         T       C     CAA     C G      ------      GA
      TGAAAG G CATTG GATGTTGGC CGGTTCA TCAGA   AAACT T GTTGAA      GCTTGA  
      |||||| | ||||| ||||||||| ||||||| |||||   ||||| | ||||||      ||||||   
      ACTTTC T GTGAC CTATAACCG GCCGAGT AGTTT   TTTGG G CAATTT      CGAATT  
GTCTTT      T -     T         T       T     CGA     T G      AACATG      GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_012214567.2	0.5	NA	NA
XM_020682789.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Jcu-MIR171a

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