PmiREN: Plant microRNA Encyclopedia

Jcu-MIR171d

Basic info.

miRNA locus ID
Jcu-MIR171d

miRNA locus accession
PmiREN010040

Organism
Jatropha curcas

Genomic location
Jcu-NW_012124114.1 58093 58236 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TTAT      T   G    T         C       C     A    T    GA    CTAAGT    TTCT
    GTGAAA AGT ATTG GATATTGGC TGGTTCA TCAGA CATG AAAA  AACC      TGAA    
    |||||| ||| |||| ||||||||| ||||||| ||||| |||| ||||  ||||      ||||     
    TACTTT TCG TGAC CTATAACCG GCCGAGT AGTTT GTAT TTTT  TTGG      ACTT    
 TTT      C   -    T         T       T     A    T    AG    TTCTTT    TTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_012214567.2	0.5	NA	NA
XM_020682789.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Jcu-MIR171d

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