PmiREN: Plant microRNA Encyclopedia

Lsa-MIR171b

Basic info.

miRNA locus ID
Lsa-MIR171b

miRNA locus accession
PmiREN010144

Organism
Lactuca sativa

Genomic location
Lsa-OFAD01041861.1 6704 6813 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GC       T C     T         C       C      ATC      CCCT
     ATGAAAG G AGCTA GATATTGGC TGGTTCA TCAGAT   TGAAAC    
     ||||||| | ||||| ||||||||| ||||||| ||||||   ||||||    T
     TACTTTC C TTGAT TTATAACCG GCCGAGT AGTCTA   GTTTTG    
ATTTT       - C     T         T       T      ---      TAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Lsat_1_v5_gn_3_681.1	0.5	0	0 (4)
Lsat_1_v5_gn_3_78621.1	0.5	0	0 (3)
Lsat_1_v5_gn_6_3180.1	0.5	NA	0 (3)
Lsat_1_v5_gn_7_9261.1	0.5	NA	0 (1)
Lsat_1_v5_gn_3_128721.1	0.5	0	2 (3)
Lsat_1_v5_gn_4_153400.1	1.5	1	2 (3)
Lsat_1_v5_gn_1_4460.1	NA	NA	2 (3)
Lsat_1_v5_gn_8_90501.1	NA	NA	2 (1)

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Lsa-MIR171b

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