Lsa-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  AGGTCACATTATAA     C          A            AAA  A      ATG
                GGAAG GATGTTGGTG GGTTCAATCTGA   CG ATTTTA   
                ||||| |||||||||| ||||||||||||   || ||||||   G
                CCTTC CTATAACCGT CCGAGTTAGGTT   GC TAAAGT   
GTTCATTAAGACATTA     A          G            CTA  A      GTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Lsat_1_v5_gn_3_128721.1 1.5 0 0 (5)
Lsat_1_v5_gn_3_681.1 1.5 0 0 (2)
Lsat_1_v5_gn_8_122140.1 5.0 NA 1 (5)
Lsat_1_v5_gn_8_122761.1 5.0 NA 1 (2)
Lsat_1_v5_gn_3_78621.1 0.5 0 2 (1)
Lsat_1_v5_gn_7_9261.1 1.5 NA 2 (2)
Lsat_1_v5_gn_5_174381.1 4.5 NA 2 (5)
Lsat_1_v5_gn_2_104501.1 5.0 NA 2 (5)
Lsat_1_v5_gn_2_129780.1 5.0 NA 2 (2)
Lsat_1_v5_gn_9_89160.1 5.0 NA 2 (2)
Lsat_1_v5_gn_1_130060.1 NA NA 2 (3)
Lsat_1_v5_gn_1_27961.1 NA NA 2 (5)
Lsat_1_v5_gn_3_36380.1 NA NA 2 (3)
Lsat_1_v5_gn_4_109141.1 NA 2 2 (5)
Lsat_1_v5_gn_5_181100.1 NA NA 2 (4)
Lsat_1_v5_gn_6_60701.1 NA NA 2 (4)
Lsat_1_v5_gn_7_45260.1 NA 2 2 (5)
Lsat_1_v5_gn_8_110401.1 NA NA 2 (1)
Lsat_1_v5_gn_8_83841.1 NA NA 2 (5)
Lsat_1_v5_gn_4_153400.1 1.5 1 NA
Lsat_1_v5_gn_6_3180.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference