Lsa-MIR171d

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GGAGGAAGCAAATAA     C         TA       T    A  A -GA     CAA
                 GAAAG GATGTTGGT  GGTTCAA CTGA GT G   TTTAC   
                 ||||| |||||||||  ||||||| |||| || |   |||||   A
                 CTTTC CTATAACCG  CCGAGTT GACT TA C   AAATG   
CTTTTTGTTCATAGTTG     A         CG       C    C  A AGA     TAG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Lsat_1_v5_gn_3_78621.1 0.0 0 0 (4)
Lsat_1_v5_gn_3_681.1 1.0 1 0 (3)
Lsat_1_v5_gn_1_100920.1 NA NA 0 (1)
Lsat_1_v5_gn_4_153400.1 1.0 0 2 (4)
Lsat_1_v5_gn_6_3180.1 1.0 NA 2 (5)
Lsat_1_v5_gn_7_9261.1 1.0 NA 2 (3)
Lsat_1_v5_gn_4_178061.1 4.0 NA 2 (5)
Lsat_1_v5_gn_7_108581.1 4.0 NA 2 (4)
Lsat_1_v5_gn_0_29221.1 4.5 NA 2 (2)
Lsat_1_v5_gn_7_49541.1 4.5 2 2 (5)
Lsat_1_v5_gn_2_134520.1 NA NA 2 (1)
Lsat_1_v5_gn_2_136081.1 NA NA 2 (1)
Lsat_1_v5_gn_3_45080.1 NA NA 2 (5)
Lsat_1_v5_gn_3_63880.1 NA NA 2 (5)
Lsat_1_v5_gn_3_65860.1 NA NA 2 (3)
Lsat_1_v5_gn_3_6981.1 NA NA 2 (5)
Lsat_1_v5_gn_4_149801.1 NA NA 2 (3)
Lsat_1_v5_gn_4_48300.1 NA NA 2 (1)
Lsat_1_v5_gn_5_124321.1 NA NA 2 (5)
Lsat_1_v5_gn_5_53581.1 NA NA 2 (5)
Lsat_1_v5_gn_6_15800.1 NA NA 2 (4)
Lsat_1_v5_gn_6_86061.1 NA NA 2 (5)
Lsat_1_v5_gn_6_96620.1 NA NA 2 (1)
Lsat_1_v5_gn_7_105700.1 NA NA 2 (4)
Lsat_1_v5_gn_7_110180.1 NA NA 2 (5)
Lsat_1_v5_gn_7_76900.1 NA NA 2 (2)
Lsat_1_v5_gn_7_97240.1 NA NA 2 (4)
Lsat_1_v5_gn_7_98620.1 NA NA 2 (4)
Lsat_1_v5_gn_8_125820.1 NA NA 2 (5)
Lsat_1_v5_gn_8_164760.1 NA NA 2 (5)
Lsat_1_v5_gn_8_35100.1 NA NA 2 (3)
Lsat_1_v5_gn_8_73881.1 NA NA 2 (2)
Lsat_1_v5_gn_8_8241.1 NA NA 2 (4)
Lsat_1_v5_gn_9_35481.1 NA NA 2 (3)
Lsat_1_v5_gn_9_57161.1 NA NA 2 (4)
Lsat_1_v5_gn_9_89580.1 NA NA 2 (3)
Lsat_1_v5_gn_3_128721.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference