Lsi-MIR171a

Basic info.

• miRNA locus ID
• Lsi-MIR171a

• miRNA locus accession
• PmiREN010377

• Organism
• Lagenaria siceraria

• Genomic location
• Lsi-MIMD01000033.1  3827247  3827389  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   ACT     T   T   AT         C       C     -     ACCC  ---    GA      T   C
      TGAAA AGC GCT  GATATTGGT CGGTTCA TCAGA TCAGT    GC   AAAT  CACCGC TGT 
      ||||| ||| |||  ||||||||| ||||||| ||||| |||||    ||   ||||  |||||| ||| T
      ACTTT TCG TGA  CTATAACCG GCCGAGT AGTCT AGTCA    CG   TTTG  GTGGCG ACG 
ATTTAT     C   -   CT         C       T     G     -ATT  AAA    -G      T   T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference