Lja-MIR171a

Basic info.

• miRNA locus ID
• Lja-MIR171a

• miRNA locus accession
• PmiREN010625

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02038441.1  48545  48674  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   C           TAT  C         T       C     --       C   -----CA    GA
    TATGAAGTAGC   TG GATATTGGC TGGTTCA TCAGA  CAAAACA ATA       CACA  
    |||||||||||   || ||||||||| ||||||| |||||  ||||||| |||       ||||  A
    GTACTTCATCG   AC CTATAACCG GCCGAGT AGTTT  GTTTTGT TAT       GTGT  
TTTT           -TC  T         T       T     TG       A   ATATTAG    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012