Lja-MIR171b

Basic info.

• miRNA locus ID
• Lja-MIR171b

• miRNA locus accession
• PmiREN010626

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02043628.1  88498  88623  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 GATTTGGGAAGCA      - C          A            A  -  -GA     A  AAG
              GAGAAA G GATGTTGGTG GGTTCAATCTGA GA CG   TTTAC TG   
              |||||| | |||||||||| |||||||||||| || ||   ||||| ||    
              TTCTTT C CTATAACCGC CCGAGTTAGACT CT GC   AAATG AC   
GTCTCGAGTACTTA      T A          G            -  A  ATA     -  GAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012