Lja-MIR171c

Basic info.

• miRNA locus ID
• Lja-MIR171c

• miRNA locus accession
• PmiREN010627

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02031370.1  7093  7206  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 TC        --C     T  C           C        ATTT    --     TG
   TGCAAAAG   AGACA GG GTGATGTTGAT TGGCTCAT    AAGT  ATAAG  
   ||||||||   ||||| || ||||||||||| ||||||||    ||||  |||||  T
   ACGTTTTT   TCTGT CT CACTATAACTA GCCGAGTA    TTCA  TATTC  
TTC        TCT     T  -           A        -GAC    AC     TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• No link

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012