Lja-MIR171e

Basic info.

• miRNA locus ID
• Lja-MIR171e

• miRNA locus accession
• PmiREN010629

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02040473.1  21742  21861  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

A     G  ---GAGAAA    G         C         A              G  AC
 GGGTA AG         AACG GATATTGGT CGGTTCAAT AGAAAGCAAAGCTC AA  
 ||||| ||         |||| ||||||||| ||||||||| |||||||||||||| ||   
 CTCGT TT         TTGC CTATAACCG GCCGAGTTA TTTTTTGTTTCGAG TT  
      G  ACAGAGTAC    A         T         G              G  TG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012