Lja-MIR171g

Basic info.

• miRNA locus ID
• Lja-MIR171g

• miRNA locus accession
• PmiREN010631

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02044255.1  782  901  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  ACATAGTATTAAGG     A                       -   C  T      TGA
                ACCTG GATATTGGTACGGTTCAATCAGA AGG AG GTTTTA   
                ||||| ||||||||||||||||||||||| ||| || ||||||    
                TGGAC CTATAACCGTGCCGAGTTAGTTT TTC TC CGAAAT   
TTTCTTCTGTACAACA     A                       A   -  T      CCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012