Lja-MIR171i

Basic info.

• miRNA locus ID
• Lja-MIR171i

• miRNA locus accession
• PmiREN011004

• Organism
• Lotus japonicus

• Genomic location
• Lja-BABK02038442.1  2353  2482  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTATGAAGTAGCTATTGCGA       T       C     --       C   -----CA    GA
                      TATTGGC TGGTTCA TCAGA  CAAAACA ATA       CACA  
                      ||||||| ||||||| |||||  ||||||| |||       ||||  A
                      ATAACCG GCCGAGT AGTTT  GTTTTGT TAT       GTGT  
TTTTGTACTTCATCGTCACTCT       T       T     TG       A   ATATTAG    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus. Plant Physiol, 2012