PmiREN: Plant microRNA Encyclopedia

Mes-MIR171a

Basic info.

miRNA locus ID
Mes-MIR171a

miRNA locus accession
PmiREN011110

Organism
Manihot esculenta

Genomic location
Mes-Chromosome01 26130620 26130766 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GT      T  C     T         C       C     -  T   A   -        AAT   TT  TTC
     ATGAAA AG GATTG GATATTGGC TGGTTCA TCAGA CA GGA AAC CTACCCTT   TTC  GC   
     |||||| || ||||| ||||||||| ||||||| ||||| || ||| ||| ||||||||   |||  ||   T
     TACTTT TC TTGAC CTATAACCG GCCGAGT AGTTT GT TCT TTG GGTGGGAA   GAG  CG   
CTCTT      C  -     T         T       T     T  -   G   T        -GT   TT  TTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_021748468.1	0.5	NA	NA
XM_021757053.1	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Mes-MIR171a

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