PmiREN: Plant microRNA Encyclopedia

Mes-MIR171c

Basic info.

miRNA locus ID
Mes-MIR171c

miRNA locus accession
PmiREN011112

Organism
Manihot esculenta

Genomic location
Mes-Chromosome05 20190854 20190973 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GC       T  C    T         T       C   --   AAATT  T      TAC
     TTGAAAG GC ATTG GATGTTGGC CGGTTCA TCA  GAC     AC ATGTTT   
     ||||||| || |||| ||||||||| ||||||| |||  |||     || ||||||    
     AACTTTC CG TGAT CTATAACCG GCCGAGT AGT  CTG     TG TACGAA   
GTCAT       T  -    T         T       T   TT   -GTAT  -      CAT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_021748468.1	0.5	NA	NA
XM_021757053.1	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Mes-MIR171c

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