PmiREN: Plant microRNA Encyclopedia

Mes-MIR171k

Basic info.

miRNA locus ID
Mes-MIR171k

miRNA locus accession
PmiREN011120

Organism
Manihot esculenta

Genomic location
Mes-Chromosome13 7962570 7962694 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

         C G    TATAC  TGA             C       T    -          CTTAT
      GAG G TGCA     AG   AGGTATTGGCGTG CTCAATC AAAT ACGTGGTTAG     
      ||| | ||||     ||   ||||||||||||| ||||||| |||| ||||||||||      
      CTC C ACGT     TC   TCTATAACTGCGC GAGTTAG TTTA TGTACCGATT     
TTTCCT   T A    -TTTT  ---             C       T    A          ATCTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_021748468.1	1.0	NA	NA
XM_021757053.1	1.0	NA	NA
XM_021737056.1	2.0	2	NA
XM_021760640.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mes-MIR171k

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