Mac-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   CCT     T   T    T     C   T       C      T   -T   CTACTC   - AATG
      TGAGA AGT ACTA GATGT GGC CGGCTCA TCAGAG GCA  GCA      AGG C    
      ||||| ||| |||| ||||| ||| ||||||| |||||| |||  |||      ||| |     
      ACTTT TCA TGAT CTATA CCG GCCGAGT AGTCTC TGT  CGT      TCC G    
TTCCCT     C   -    T     A   T       T      T   TT   ----AC   T AAAC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GSMUA_Achr11T21080_001 0.0 NA NA
GSMUA_Achr11T04360_001 0.5 NA NA
GSMUA_Achr1T05940_001 0.5 0 NA
GSMUA_Achr5T20860_001 0.5 NA NA
GSMUA_Achr6T36740_001 0.5 0 NA
GSMUA_Achr8T11160_001 0.5 NA NA
GSMUA_Achr3T29970_001 1.5 1 NA
GSMUA_Achr4T03460_001 1.5 1 NA
GSMUA_Achr4T07190_001 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference