PmiREN: Plant microRNA Encyclopedia

Mac-MIR171k

Basic info.

miRNA locus ID
Mac-MIR171k

miRNA locus accession
PmiREN012126

Organism
Musa acuminata

Genomic location
Mac-chrUn_random 20350808 20350913 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAA   -      G      C          A       A      -A   TT
     GAA GAAGAA ACATGG GTGGTATTGG TCGGTTC TGTCTT  TGA  
     ||| |||||| |||||| |||||||||| ||||||| ||||||  |||  G
     CTT CTTCTT TGTGCT CACTATAACC AGCCGAG ACAGGA  GCT  
TGCCA   A      A      -          A       C      CA   CG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
GSMUA_Achr1T26740_001	1.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Mac-MIR171k

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