PmiREN: Plant microRNA Encyclopedia

Nnu-MIR171c

Basic info.

miRNA locus ID
Nnu-MIR171c

miRNA locus accession
PmiREN012315

Organism
Nelumbo nucifera

Genomic location
Nnu-NW_010729086.1 2712674 2712910 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       CTATTG   ATT      G T         -     AATATC T --    --  - ACTG   TTC   GGATTCGAGGTACCCAGCAGCTTGAAAGAACTGATCCAACTGTGAACAATCGAATTC
             GGA   GCAGTC C GATTGAGCC GTGCC      G C  AGCG  TG G    TGA   GTT                                                         
             |||   |||||| | ||||||||| |||||      | |  ||||  || |    |||   |||                                                         G
             CCT   CGTTAG G TTAACTTGG CGCGG      A G  CATT  TG C    AGG   CTG                                                         
AATGTACAATTCA   ---      - -         T     ------ - GA    GG  T ----   ---   AATAAAATTAAACGGCTTGTTAAAGGTGGACTAACCCTCGTTGCTACCGCTCCCCTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_010256898.1	0.5	0	NA
XM_010260669.2	0.5	NA	NA
XM_019198621.1	0.5	NA	NA
XM_010280253.2	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Nnu-MIR171c

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