Nta-MIR171n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
          TG   GTATATC     A                   G      C  TT      CT
       GCT  TAG       ATACG GATGTTGGTGCGGTTCAAT AGAAAG AG  GTCAAA  
       |||  |||       ||||| ||||||||||||||||||| |||||| ||  ||||||  A
       TGA  ATC       TGTGC CTATAACCGTGCCGAGTTA TTTTTC TC  CAGTTT  
ATACTGT   TG   -----AC     A                   G      A  -C      TG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_016582020.1 0.5 NA NA
XM_016582022.1 0.5 NA NA
XM_016582023.1 0.5 NA NA
XM_016582024.1 0.5 NA NA
XM_016631827.1 0.5 NA NA
XM_016631828.1 0.5 NA NA
XR_001643051.1 0.5 NA NA
XR_001643052.1 0.5 NA NA
XR_001643053.1 0.5 NA NA
XR_001643054.1 0.5 NA NA
XR_001643055.1 0.5 NA NA
XM_016577663.1 1.0 NA NA
XM_016588934.1 1.0 NA NA
XM_016625781.1 1.5 NA NA
XM_016625782.1 1.5 NA NA
XM_016635528.1 1.5 NA NA
XM_016584434.1 2.0 NA NA
XM_016642100.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference