Nta-MIR171r

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   TCAA    AT  A      C          A         C  A  -   -G      TTTT
  G    GTAA  TA AGGAAG GATGTTGGTG GGTTCAATC GA GA CGT  TTTACG    
  |    ||||  || |||||| |||||||||| ||||||||| || || |||  ||||||    G
  C    CATT  AT TCCTTC CTATAACCGT CCGAGTTAG CT CT GCA  AAATGC    
TA CATG    AT  A      A          G         A  -  A   AA      TTTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_016582020.1 0.5 NA NA
XM_016582022.1 0.5 NA NA
XM_016582023.1 0.5 NA NA
XM_016582024.1 0.5 NA NA
XM_016631827.1 0.5 NA NA
XM_016631828.1 0.5 NA NA
XR_001643051.1 0.5 NA NA
XR_001643052.1 0.5 NA NA
XR_001643053.1 0.5 NA NA
XR_001643054.1 0.5 NA NA
XR_001643055.1 0.5 NA NA
XM_016577663.1 1.0 NA NA
XM_016588934.1 1.0 NA NA
XM_016625781.1 1.5 NA NA
XM_016625782.1 1.5 NA NA
XM_016635528.1 1.5 NA NA
XM_016584434.1 2.0 NA NA
XM_016642100.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference