Nta-MIR171s

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CCATGAAACAGTAATTCTGA       C      TCC    -     AAATAAAAAAA       TG
                      TATTGGC TGGTTC   CAGA CAAAT           TCCTCTA  
                      ||||||| ||||||   |||| |||||           |||||||   
                      ATAACCG ACCGAG   GTTT GTTTA           AGGAGGT  
TATTTTACTTTCTCTTGATTCT       T      TTA    C     -----ATCTTG       AA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

XM_016582267.1 1.5 NA NA
XM_016582268.1 1.5 NA NA
XM_016582020.1 2.0 NA NA
XM_016582022.1 2.0 NA NA
XM_016582023.1 2.0 NA NA
XM_016582024.1 2.0 NA NA
XM_016625781.1 2.0 NA NA
XM_016625782.1 2.0 NA NA
XM_016631030.1 2.0 1 NA
XM_016631031.1 2.0 1 NA
XM_016631827.1 2.0 NA NA
XM_016631828.1 2.0 NA NA
XM_016635528.1 2.0 NA NA
XM_016635712.1 2.0 NA NA
XM_016635713.1 2.0 NA NA
XR_001643051.1 2.0 NA NA
XR_001643052.1 2.0 NA NA
XR_001643053.1 2.0 NA NA
XR_001643054.1 2.0 NA NA
XR_001643055.1 2.0 NA NA
XR_001653769.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference