Oru-MIR171a

Basic info.

• miRNA locus ID
• Oru-MIR171a

• miRNA locus accession
• PmiREN013923

• Organism
• Oryza rufipogon

• Genomic location
• Oru-HG417168.1  27096417  27096533  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  CTCTCTATGT  GA   G                       A  CTTGT     GAAG
            GG  ACG GATATTGGTGCGGTTCAATCAGA AG     GCTCC    
            ||  ||| ||||||||||||||||||||||| ||     |||||     
            CC  TGC CTATAACCGTGCCGAGTTAGTTT TC     CGGGG    
TCGTCGACGTTT  GC   A                       C  -ACCT     AGCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference