Oru-MIR171c

Basic info.

• miRNA locus ID
• Oru-MIR171c

• miRNA locus accession
• PmiREN013925

• Organism
• Oryza rufipogon

• Genomic location
• Oru-HG417167.1  28471234  28471378  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

C          A    -- C                     A          C      A  A  TAAGCAAGA
 TTGGGCTGGG GAGT  G GATGTTGGCATGGTTCAATCA ACCGGGCAAA TTATGC CT GC         
 |||||||||| ||||  | ||||||||||||||||||||| |||||||||| |||||| || ||         T
 AATTCGGTCC TTCG  C CTATAACCGTGCCGAGTTAGT TGGTTTGTTT GGTATG AC GT         
T          G    AA A                     C          T      -  -  ATAGGGACG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference