Oru-MIR171d

Basic info.

• miRNA locus ID
• Oru-MIR171d

• miRNA locus accession
• PmiREN013926

• Organism
• Oryza rufipogon

• Genomic location
• Oru-HG417167.1  1699281  1699417  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  GAATGAAATGGTA    T         T       C     C     TGGC    T  AA    T   TG
               GCTA GATGTTGGC CGGCTCA TCAGA GGCAT    GTGA GC  AGCA GCA  
               |||| ||||||||| ||||||| ||||| |||||    |||| ||  |||| |||   
               TGAT CTATAACCG GCCGAGT AGTCT TTGTG    CACT CG  TCGT CGT  
ATGTGTACTTTCTCG    T         T       T     -     --TT    -  -A    T   GC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference