Oru-MIR171e

Basic info.

• miRNA locus ID
• Oru-MIR171e

• miRNA locus accession
• PmiREN013927

• Organism
• Oryza rufipogon

• Genomic location
• Oru-HG417174.1  18882148  18882300  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  AA      T  TA   AT         C       C     ----------    T   C G    -GA   G     GAA
    ATGAAA TG  GCT  GATGTTGGC CGGCTCA TCAGA          TGGA CAT G TGCA   AGA TGCAT   
    |||||| ||  |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||   T
    TATTTT AC  CGA  CTATAACCG GCCGAGT AGTCT          ACCT GTA T ATGT   TCT ACGTA   
AACG      T  CA   CT         T       T     TCAAGGTCGT    C   - G    GAC   G     GTC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference