Osa-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
       AC  CCT       ACGG        G               AGCTT T     GGAA
         GG   TGCGACG    GATATTGG GCGGTTCAATCAGAA     G GCTCC    
         ||   |||||||    |||||||| |||||||||||||||     | |||||     
         CC   ACGCTGC    CTATAACC TGCCGAGTTAGTTTT     C CGAGG    
GTTTCACTA  --T       ---A        G               CTCAT T     AGCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1590 Oni-MIR171e Oni-8: 4464423-4464540 + Oryza sativa Osa-MIR171b Osa-Chr8: 5369145-5369262 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

LOC_Os02g44360.1 0.5 NA 0 (14)
LOC_Os02g44370.1 0.5 NA 0 (14)
LOC_Os04g46860.1 0.5 NA 0 (17)
LOC_Os06g01620.1 0.5 NA 0 (5)
LOC_Os12g42860.1 NA NA 1 (1)
LOC_Os01g13470.1 NA NA 2 (5)
LOC_Os02g58510.1 NA NA 2 (1)
LOC_Os03g57460.1 NA NA 2 (7)
LOC_Os07g07250.1 NA NA 2 (3)
LOC_Os08g23410.1 NA NA 2 (2)
LOC_Os08g37950.1 NA NA 2 (5)
LOC_Os08g44850.1 NA NA 2 (1)
LOC_Os10g40390.1 1.0 NA 4 (1)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference