Osa-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
C          A    -- C                     A          C      A  A  TAAGCAAGA
 TTGGGCTGGG GAGT  G GATGTTGGCATGGTTCAATCA ACCGGGCAAA TTATGC CT GC         
 |||||||||| ||||  | ||||||||||||||||||||| |||||||||| |||||| || ||         T
 AATTCGGTCC TTCG  C CTATAACCGTGCCGAGTTAGT TGGTTTGTTT GGTATG AC GT         
T          G    AA A                     C          T      -  -  ATAGGGACG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-1586 Oni-MIR171b Oni-3: 29788077-29788221 + Oryza sativa Osa-MIR171f Osa-Chr3: 30027766-30027910 +

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

LOC_Os02g44360.1 0.5 NA 0 (13)
LOC_Os02g44370.1 0.5 NA 0 (9)
LOC_Os04g46860.1 0.5 NA 0 (12)
LOC_Os06g01620.1 0.5 NA 0 (7)
LOC_Os08g37950.1 NA NA 0 (2)
LOC_Os01g50200.1 NA NA 1 (1)
LOC_Os01g13470.1 NA NA 2 (3)
LOC_Os02g58510.1 NA NA 2 (1)
LOC_Os03g57460.1 NA NA 2 (1)
LOC_Os04g32560.1 NA NA 2 (1)
LOC_Os05g32580.1 NA NA 2 (1)
LOC_Os06g08480.1 NA NA 2 (1)
LOC_Os08g23410.1 NA NA 2 (3)
LOC_Os08g44850.1 NA NA 2 (3)
LOC_Os10g40390.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference