Pha-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   GG      T    G   T         T       C     -TG    C     -G    -   ATGC
     ATGAAA AGTA CTA GATGTTGGC CGGCTCA TCAGA   ACCA GGGAT  CGAT GCG    
     |||||| |||| ||| ||||||||| ||||||| |||||   |||| |||||  |||| |||    A
     TACTTT TCAT GAT CTATAACCG GCCGAGT AGTCT   TGGT CCCTG  GCTA CGC    
AAGCA      C    -   T         T       T     TTG    -     GA    G   CCGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.9G623900.1 0.0 0 NA
PhHAL.1G329900.1 0.5 NA NA
PhHAL.4G368200.1 0.5 NA NA
PhHAL.7G240100.1 0.5 NA NA
PhHAL.9G407600.1 1.0 NA NA
PhHAL.6G024200.1 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference