PmiREN: Plant microRNA Encyclopedia

Pha-MIR171d

Basic info.

miRNA locus ID
Pha-MIR171d

miRNA locus accession
PmiREN016232

Organism
Panicum hallii

Genomic location
Pha-Chr09 55210963 55211110 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AA       T  A   AT         T       C    -AAT     GGAGCCATGGCCCATGGATCTGGC
     ATGGAAG GT GCT  GGTGTTGGC CGGCTCA TCAG    CTGCA                        
     ||||||| || |||  ||||||||| ||||||| ||||    |||||                        T
     TACTTTC CA CGA  CTATAACCG GCCGAGT AGTC    CGGTC                        
GTTTG       C  -   CT         T       T    ATTG     CTCGATCGTGACGTCCGACACGGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PhHAL.9G623900.1	0.0	0	NA
PhHAL.1G329900.1	0.5	NA	NA
PhHAL.4G368200.1	0.5	NA	NA
PhHAL.7G240100.1	0.5	NA	NA
PhHAL.9G407600.1	1.0	NA	NA
PhHAL.6G024200.1	1.5	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pha-MIR171d

>