Pha-MIR171e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   G     CCC  -CCT          TGA    T  C    -  ACAAA   C  AA  C  TAGTTACGCGTGCTACTCCTACTTTCTCAAGGTATGAAAAAATTTGCACAAAATTTGTC
    ATGCT   GT    TTGATCTGAT   GCCG GC AATA TC     CTT CC  GC TA                                                           
    |||||   ||    ||||||||||   |||| || |||| ||     ||| ||  || ||                                                           A
    TATGA   CA    AACTGGACTA   CGGT CG TTGT AG     GAG GG  TC AG                                                           
TCGA     --A  TTTC          TTA    -  -    T  AGAGA   A  -A  -  AGGAACGACATGTTTCCTGAACTACGTTGTGGTTTTGAATTTAAAGTTCCGCATATCCT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.9G623900.1 0.0 0 NA
PhHAL.1G329900.1 0.5 NA NA
PhHAL.4G368200.1 0.5 NA NA
PhHAL.7G240100.1 0.5 NA NA
PhHAL.9G407600.1 1.0 NA NA
PhHAL.6G024200.1 1.5 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference