Pha-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  A      -    CG   T  C         T          G  C   AA  -    GT   A
   GCGAAT AAGA  ACA GG GTGATGTTG TTCGGCTCAT TC TCC  TT CCCG  GTG 
   |||||| ||||  ||| || ||||||||| |||||||||| || |||  || ||||  ||| A
   TGCTTA TTCT  TGT CT CACTATAAC AAGCCGAGTA AG AGG  AG GGGC  CGC 
TGA      C    TA   T  -         C          G  -   GC  C    AC   T

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.9G533200.1 0.0 NA NA
PhHAL.2G113000.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference