Pha-MIR171i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGGTTGATC  T  AAA   C          A         C    A A  C       C
           AC GG   GAG GATGTTGGTG GGTTCAATC GATG C GG TTTACAG 
           || ||   ||| |||||||||| ||||||||| |||| | || ||||||| A
           TG CC   TTC CTATAACCGC CCGAGTTAG CTAT G CC AAATGTC 
TAGCTCCGGTT  T  GCC   T          G         T    - G  A       G

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

PhHAL.1G329900.1 0.0 NA NA
PhHAL.4G368200.1 0.0 NA NA
PhHAL.7G240100.1 0.0 NA NA
PhHAL.9G407600.1 0.0 NA NA
PhHAL.9G623900.1 1.5 2 NA
PhHAL.2G193300.1 2.0 1 NA
PhHAL.6G058400.1 2.0 1 NA
PhHAL.7G184500.1 2.0 NA NA
PhHAL.8G090700.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference