Pvi-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AA       T  A    T         T       C         GA      CA    CCA    G    -A  T
     ATGGAAG GT GCTA GGTGTTGGC CGGCTCA TCAGAAGCT  AGGAGC  TGGC   TGTG ATCT  GC 
     ||||||| || |||| ||||||||| ||||||| |||||||||  ||||||  ||||   |||| ||||  || A
     TACTTTC CA CGAT CTATAACCG GCCGAGT AGTCTTTGG  TCCTCG  ATCG   ACGT TAGA  CG 
GTTTG       C  -    T         T       T         GG      --    -TG    -    CA  C

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.6KG089200.1 0.0 0 NA
Pavir.1KG431100.1 0.5 NA NA
Pavir.4KG010200.1 0.5 NA NA
Pavir.4NG003100.1 0.5 NA NA
Pavir.7KG283500.1 0.5 NA NA
Pavir.7NG276500.1 0.5 0 NA
Pavir.9KG317700.1 1.0 NA NA
Pavir.9NG478100.1 1.0 NA NA
Pavir.7KG392000.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference