Pvi-MIR171h

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
         GTTTTCGT          TGA    T  C    -  A AAA    -        ---- T  CATCAGTTACGCGTACTACTGCTACTTTCTCAAGGTATGAAATTTTTT
   GGTGGT        TTGATCTGAT   GCCG GC AATA TC C   CTTC CCAAGCCT    A AG                                                
   ||||||        ||||||||||   |||| || |||| || |   |||| ||||||||    | ||                                                 
   TTATCG        AACTGGACTA   CGGT CG TTGT AG G   GAGG ACGATGTA    G TT                                                
GAA      -AACATTC          TTA    -  -    T  A --A    A        CTAT -  TCCTGAACTACGTTGTGGTTTGGATTTGAAGTGCCGCATGTCCTACTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.6KG089200.1 0.0 0 NA
Pavir.1KG431100.1 0.5 NA NA
Pavir.4KG010200.1 0.5 NA NA
Pavir.4NG003100.1 0.5 NA NA
Pavir.7KG283500.1 0.5 NA NA
Pavir.7NG276500.1 0.5 0 NA
Pavir.9KG317700.1 1.0 NA NA
Pavir.9NG478100.1 1.0 NA NA
Pavir.7KG392000.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference