PmiREN: Plant microRNA Encyclopedia

Pvi-MIR171k

Basic info.

miRNA locus ID
Pvi-MIR171k

miRNA locus accession
PmiREN016385

Organism
Panicum virgatum

Genomic location
Pvi-Chr07K 63636808 63636919 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AA   A     CG      C         TTC           - T   TGA   TG
     GGA GAAGA  ACATGG GTGGTATTG   CGGCTCATGTC C TCT   GTC  
     ||| |||||  |||||| |||||||||   ||||||||||| | |||   |||   
     CTT CTTCT  TGTACT CACTATAAC   GCCGAGTGTAG G AGG   CGG  
GGGGA   A     TA      -         CAA           T T   ---   TT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.9KG504600.1	0.0	NA	NA
Pavir.9KG512500.1	0.0	0	NA
Pavir.9NG665600.1	0.0	NA	NA
Pavir.2KG063300.1	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR171k

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