Pvi-MIR171n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      AGCATGTT  T   ATAA               C          AGT        ATTATT
              GC GGG    GGAGGTATTGGCGCG CTCAATCCGA   CGTGGCTG      
              || |||    ||||||||||||||| ||||||||||   ||||||||      G
              CG TCC    CCTCTATAACTGCGC GAGTTAGGTT   GTACCGAC      
CCATATCCTCTATT  T   ----               C          CTT        GACGCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1KG431100.1 0.5 NA NA
Pavir.4KG010200.1 0.5 NA NA
Pavir.4NG003100.1 0.5 NA NA
Pavir.7KG283500.1 0.5 NA NA
Pavir.7NG276500.1 0.5 0 NA
Pavir.9KG317700.1 0.5 NA NA
Pavir.9NG478100.1 0.5 NA NA
Pavir.1KG545200.1 2.0 1 NA
Pavir.7KG392000.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference