Pam-MIR171a

Basic info.

• miRNA locus ID
• Pam-MIR171a

• miRNA locus accession
• PmiREN016560

• Organism
• Persea americana

• Genomic location
• Pam-NXHZ01000371.1  214084  214196  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 TGGGCCA     -A    C                     A        TTGTGGT
        GGTGA  AGTG GATGTTGGTGTGGCTCAATCA GTCGGAAC       
        |||||  |||| ||||||||||||||||||||| ||||||||       A
        TCGCT  TTAC CTATAACCGTGCCGAGTTAGT TAGTTTTG       
TAGTCGTG     AG    A                     C        TGGGTTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference