Pam-MIR171c

Basic info.

• miRNA locus ID
• Pam-MIR171c

• miRNA locus accession
• PmiREN016562

• Organism
• Persea americana

• Genomic location
• Pam-NXHZ01002773.1  172232  172346  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

       -  CTTTTG    T  G         C             A     T     TAC
     GA GC      TGCA CG GATATTGGT CGGTTCAATTAGA AGCAG GCTCG   
     || ||      |||| || ||||||||| ||||||||||||| ||||| |||||   A
     CT CG      GCGT GC CTATAACCG GCCGAGTTAGTTT TTGTC CGGGT   
CCGTT  A  ---TTA    -  A         T             G     T     CAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference